Basic Information
VIS ID
TVIS30015506
Fusion event
HIV-LOC101929767 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
41318325/43166308 (Hg38)
End
41318384/43166308 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101929767
Nearest miRNA
hsa-mir-1180/Upstream/342365; hsa-mir-10226/Downstream/278498;
Nearest TSS
ENST00000595228/Upstream/40825; ENST00000592304/Downstream/3937;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/39865, chr17-CpG: 27/Downstream/4647
Nearby gene
NBR1(No orient, 4172)
Upstream sequence
tcttcctctctctcttttcctcttttcctctctgtctctttcctttctctctctctgctggtctttccttgcctctgccagccacttatgctgctgttct
Downstream sequence
taagggaactggtctgggttccttggcttataggttaccttgtgccatacctttgaaacaagggacctgtccaggcttccttctaatggccaacctacct
Target sequence
ctcaaccactatgtgttgggggtggggggtctaaaaccagctctaatcaagtgtctctg
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate