VISDB Viral Integration Site DataBase

VIS ID

TVIS30015521

Fusion event

HIV-MBTD1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.33

Reference genome

Start

End

49324345/51247165 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-151a-3p ; hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-27a-3p ; hsa-mir-149-5p ; hsa-mir-1277-5p ; hsa-mir-7856-5p ; hsa-mir-6083 ; hsa-mir-3658 ; hsa-mir-190a-3p ; hsa-mir-3688-3p ; hsa-mir-8076 ; hsa-mir-5011-5p ; hsa-mir-590-3p ; hsa-mir-5587-5p ; hsa-mir-676-5p ; hsa-mir-6507-3p

Nearest miRNA

hsa-mir-10226/Upstream/478435; hsa-mir-1250/Downstream/5644105;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/79879, chr17-CpG: 150/Downstream/12576

Upstream sequence

aggctatgtacatgtgcatatgtgtgtattcataaaaataaaaatattgtatgttaaggaagtattcatccattcctattttctgaaaagtttttgttag

Downstream sequence

gaacaggtgttgaattttgtcataggctttttcggcttctataaagagaacacaacttttctcttctgaccgattagtatggtgaactacataaatagat

Target sequence

tattaagtcatggagaaaatgggcatccttactctattcttgattgtggtgtttcttaataagattctggctttagggttaaggctatgtacatgtgcatatgtgtgtattcataaaaataaaaatattgtatgttaaggaagtattcatccattcctattttctgaaaagtttttgttag