Basic Information
VIS ID
TVIS30015522
Fusion event
HIV-LINC01982 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
50595907/52518547 (Hg38)
End
50596020/52518547 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01982
Nearest miRNA
hsa-mir-10226/Upstream/1749817; hsa-mir-1250/Downstream/4372723;
Nearest TSS
ENST00000595228/Upstream/128032; ENST00000412360/Downstream/343574;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/359673, chr17-CpG: 17/Downstream/1238742
Nearby gene
CA10(No orient, 358746)
Upstream sequence
ggcactATTAATATCCATATAACAATGAACACATGGCCGCTATTAGCAGTGGGGTATAATTTGTGCCACTGGCATTATTACTCTGAGTAAAATTTTTGAT
Downstream sequence
ctcagttattcgggaggcggaagcagggaggatcccttgaggccaggagtttgaggttgcagtgagctatgatcaagccactgcacttcagccagagtga
Target sequence
GTTAGTTTTTACTTTCTCATTACCCATCATACAGTAATGAAGTGGCCCCTAGGAGAGGAAACTTGAATTCTGAAAGTGAGCTTTAgccaggcacaatcgcacacacctgtagt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate