VISDB Viral Integration Site DataBase

VIS ID

TVIS30015535

Fusion event

HIV-PITPNC1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q24.2

Reference genome

Start

End

65385824/67389887 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-126-3p ; hsa-mir-335-5p ; hsa-mir-142-3p ; hsa-mir-7-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-1277-5p ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-4672 ; hsa-mir-5011-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6768-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-369-3p ; hsa-mir-548v ; hsa-mir-548d-3p ; hsa-mir-548au-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-6516-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-488-3p ; hsa-mir-657 ; hsa-mir-4635 ; hsa-mir-3665 ; hsa-mir-4678 ; hsa-mir-935 ; hsa-mir-5003-3p ; hsa-mir-140-3p ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa

Nearest miRNA

hsa-mir-10226/Upstream/602719; hsa-mir-1250/Downstream/81602;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/10872, chr17-CpG: 43/Downstream/327765

Upstream sequence

tcctgcctcagtctcccgagtagctgggactacaggcacgtgccaccacgcccggctaattgtttgtatttttagtagagacggggtttcactgtggtag

Downstream sequence

ccaggatggtctcgaactcctgacctcgtgatccacccacctcggcctcccaaagtgctgggattacagacgcgagccaccgtgcccggccAAAGCTGTT

Target sequence

tcactctgttgcccaggctagagtgctatggcgcaatctcggctcactgcaccctccgcttcctgggttcaagcaattctcctgcctcagtctcccgagtagctgggactacaggcacgtgccaccacgcccggctaattgtttgtatttttagtagagacggggtttcactgtggtag