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TVIS30015540
Basic Information
VIS ID
TVIS30015540
Fusion event
HIV-GRB2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
73398318/75402237 (Hg38)
End
73398590/75402237 (Hg38)
Orient
+
Location type
Intronic
Target gene
GRB2
miRNAs that regulate target gene
hsa-mir-433-3p
;
hsa-mir-378a-3p
;
hsa-mir-124-3p
;
hsa-mir-34a-5p
;
hsa-mir-7-5p
;
hsa-mir-93-5p
;
hsa-mir-16-5p
;
hsa-mir-92b-3p
;
hsa-mir-100-5p
;
hsa-mir-376c-3p
;
hsa-mir-27a-3p
;
hsa-mir-200a-3p
;
hsa-mir-541-5p
;
hsa-mir-6834-5p
;
hsa-mir-3915
;
hsa-mir-5196-5p
;
hsa-mir-6787-5p
;
hsa-mir-4747-5p
;
hsa-mir-663a
;
hsa-mir-1908-5p
;
hsa-mir-1255b-5p
;
hsa-mir-1255a
;
hsa-mir-6077
;
hsa-mir-4749-5p
;
hsa-mir-4706
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-6875-5p
;
hsa-mir-4419a
;
hsa-mir-3126-5p
;
hsa-mir-3928-3p
;
hsa-mir-9500
;
hsa-mir-6165
;
hsa-mir-5586-3p
;
hsa-mir-3934-5p
;
hsa-mir-7853-5p
;
hsa-mir-105-5p
;
hsa-mir-522-3p
;
hsa-mir-224-3p
;
hsa-mir-2054
;
hsa-mir-6739-5p
;
hsa-mir-6733-5p
;
hsa-mir-3153
;
hsa-mir-6081
;
hsa-mir-6783-5p
;
hsa-mir-4779
;
hsa-mir-4519
;
hsa-mir-6838-5p
;
hsa-mir-497-5p
;
hsa-mir-424-5p
;
hsa-mir-195-5p
;
hsa-mir-15b-5p
;
hsa-mir-15a-5p
;
hsa-mir-6891-5p
;
hsa-mir-3173-3p
;
hsa-mir-583
;
hsa-mir-4282
;
hsa-mir-548x-3p
;
hsa-mir-548j-3p
;
hsa-mir-548aq-3p
;
hsa-mir-548am-3p
;
hsa-mir-548aj-3p
;
hsa-mir-548ah-3p
;
hsa-mir-548ae-3p
;
hsa-mir-548z
;
hsa-mir-548h-3p
;
hsa-mir-548d-3p
;
hsa-mir-548bb-3p
;
hsa-mir-548ac
;
hsa-mir-329-3p
;
hsa-mir-411-5p
;
hsa-mir-96-3p
;
hsa-mir-1281
;
hsa-mir-18a-3p
;
hsa-mir-1913
;
hsa-mir-221-5p
;
hsa-mir-22-3p
;
hsa-mir-3120-3p
;
hsa-mir-3155a
;
hsa-mir-3155b
;
hsa-mir-3194-3p
;
hsa-mir-324-3p
;
hsa-mir-4438
;
hsa-mir-4632-3p
;
hsa-mir-484
;
hsa-mir-5197-3p
;
hsa-mir-545-3p
;
hsa-mir-558
;
hsa-mir-660-3p
;
hsa-mir-6791-3p
;
hsa-mir-6829-3p
;
hsa-mir-760
;
hsa-mir-8073
Nearest miRNA
hsa-mir-10226/Upstream/653538; hsa-mir-1250/Downstream/3832;
Nearest TSS
ENST00000595228/Upstream/8114;
ENST00000581834/Downstream/3249;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/112464
,
chr17-CpG: 77/Downstream/2899
Upstream sequence
aaagcccattttataacaaagtgatgaatatctcctgtaatttactgactatggtactgagagtgaaaaacaaaacagttatatgggtactggaagtata
Downstream sequence
TAAAGCCACACAGCAGTCTTATTATTTATGGCTGCATTTGGTAACAACAGTTTTGATCCTTAGACCATCTGTATCAAAATccacccattcagagactgat
Target sequence
gtttttactgagcgctattgctttcacaccactgtaaagctgaaaaatcTTTCGTCTGAGTCTACAGACTCAGAAGAATTCTCTGGTAGGCAAATTAATGACCCTATTAAGTATAAATTTCAAGTTAAATCACTCCACATCACAGTATTAAGAATGCTAAAAAATTTACACATGTAAAAATGAATCATGCTTATAGTCACTCATTCCATTAGGCTATTCTAAATACTGACTTTGTGTATACACAGAAAAATGTAA
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Sample Information
×
Sample name
PT1
Sample type
PBMC
Age
47
Gender
Male
CpG Island Information
×
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