VISDB Viral Integration Site DataBase

VIS ID

TVIS30015543

Fusion event

HIV-UNC13D integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.1

Reference genome

Start

End

73824628/75829056 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-320a ; hsa-mir-3180-5p ; hsa-mir-7150 ; hsa-mir-6867-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-6826-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-6832-3p ; hsa-mir-6892-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-665

Nearest miRNA

hsa-mir-10226/Upstream/44449; hsa-mir-1250/Downstream/268963;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/43829, chr17-CpG: 78/Downstream/26123

Upstream sequence

TTGCGGCACGGCTCAGCAGGCACCAGGCTGCGGGGAGAGTCAGGGCTCTGCTGCCAGCCCCAGCACAGCCACCCCAGCCTCGGCACATGGGTTCACCCAC

Downstream sequence

TTGGTGTTGGGAACCAGCCAGGGTTTGGACTGCAAAGCCAGCTCTCAGCCTGGCACCTCTCAGCCATGTGGTGCAATGCCTGCTCTGACCGTGGGCTGAT

Target sequence

TCCAGGCCCTTCTCCCCAGTTAAACTTCTTGGTGACTTCCCCATGCAAGGAGAGTCACGTTACACTTAGCTTAAAGTTCACTGGTCTCTTGATTAGACCGAGAGATGGGCCGTGGCTGTCCCACTGGCTCCCGTCTCCAGGGAAGCTGTTCTCCGACCCTGGCATCACCTCTCTGGGGCCCCTGCCTGAGCTTTACAGGCTCCCGTCCCCGCACCACCCTGCCCTGGGCTCAGGCCTACCGTTGGGTGCGGGGTA