VISDB Viral Integration Site DataBase

VIS ID

TVIS30015551

Fusion event

HIV-SEPTIN9 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

75446126/77449826 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-186-5p ; hsa-mir-10a-5p ; hsa-mir-5587-5p ; hsa-mir-670-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-216b-3p ; hsa-mir-4802-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-6500-3p ; hsa-mir-4717-3p ; hsa-mir-3614-5p ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-1914-3p ; hsa-mir-3144-5p ; hsa-mir-3184-5p ; hsa-mir-3191-3p ; hsa-mir-3677-3p ; hsa-mir-423-5p ; hsa-mir-4652-5p ; hsa-mir-4655-3p ; hsa-mir-4710 ; hsa-mir-491-5p ; hsa-mir-5194 ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6781-5p ; hsa-mir-6795-3p ; hsa-mir-6804-5p ; hsa-mir-6810-5p ; hsa-mir-6826-3p ; hsa-mir-6882-3p ; hsa-mir-6887-3p

Nearest miRNA

hsa-mir-10226/Upstream/52772; hsa-mir-1250/Downstream/2257350;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/47381, chr17-CpG: 35/Downstream/1569

Nearest cancer related gene

SEPTIN9(OG, No orient, 0)

Upstream sequence

TGGGCTGCAGACAGTGGAAAAGACAGGCTCTTCTCACTCCCAGTGCTGGGGAAATTAGCTTCTTGGAGGAAGGGGGAGCTGTATTTTCTGAGTGGCCGCA

Downstream sequence

GACACTCCCCCGGCTCTGGCCTGGCGCCCGGAGACCAGTAGCAGCAGCTCCCCACGGCCGTTCACTGTGAGGGTGGGGAGGGCCGTGGGACCAGGAGGCC

Target sequence

CTTCCTGGCCTAGACGTGTGTGTCTTGctgtaattttggcgactggtgttggtggtgcccattttatggatggggaaggtcaaattccacagatattgagtgacaggcccagggccttggatttcagtgtttgactcagaacccaggtctctgatctgccaccagcctccctcccattCAGATGGGAACAGGGACTCCGGGCATGCAGTCTTCTCCCA