VISDB Viral Integration Site DataBase

VIS ID

TVIS30015553

Fusion event

HIV-TNRC6C integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

75986787/77990592 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30b-5p ; hsa-mir-4509 ; hsa-mir-4643 ; hsa-mir-95-5p ; hsa-mir-320a ; hsa-mir-331-5p ; hsa-mir-320b ; hsa-mir-320c ; hsa-mir-548m ; hsa-mir-320d ; hsa-mir-4429 ; hsa-mir-4666a-5p ; hsa-mir-125b-2-3p ; hsa-mir-380-3p ; hsa-mir-378a-5p ; hsa-mir-1200 ; hsa-mir-4666b ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-4709-5p ; hsa-mir-7159-5p ; hsa-mir-1273e ; hsa-mir-580-3p ; hsa-mir-539-5p ; hsa-mir-4635 ; hsa-mir-1264 ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-5700 ; hsa-mir-6512-5p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-629-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-1305 ; hsa-mir-4652-3p ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-8064 ; hsa-mir-3182 ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-5010-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6844 ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-877-3p ; hsa-mir-4677-5p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-676-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-511-5p ; hsa-mir-502-5p ; hsa-mir-6830-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p

Nearest miRNA

hsa-mir-10226/Upstream/593538; hsa-mir-1250/Downstream/1716584;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/30722, chr17-CpG: 31/Downstream/50312

Nearby gene

TNRC6C(No orient, 13644)

Upstream sequence

TGTGCCTTCCCACTGTAGAACTTTCATGCGTGTTGTCCCCTGTTGTGCCACCAGGTCtccttcagaacttagctcactttcgcaggaaatctgtgacctc

Downstream sequence

GTTTTAAAAAATTCATTAAGTGTAGGTATGGCCTCAGTATAATGTTTATCTATATTATCACCATAAAGAATGGCCTGCTAGCAACTATGGCAATTTGTCT

Target sequence

ctgaccagccagaatccttcctcttaagtgctctcatagcaccctgcacttcttattagcatgctgtaattaatgtattatgaaggaaattgtctgtctTTCCCATAGAATTAG