VISDB Viral Integration Site DataBase

VIS ID

TVIS30015560

Fusion event

HIV-CYTH1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

76725374/78729516 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-34a-5p ; hsa-mir-1827 ; hsa-mir-3940-3p

Nearest miRNA

hsa-mir-10226/Upstream/1332462; hsa-mir-1250/Downstream/977660;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/226523, chr17-CpG: 155/Downstream/51912

Upstream sequence

tttaatgcaaattaaaacatgaataacataccattttccattagtctggcaggaatcagaatgccagatgagacgaaatactgtcaggggagtgggctac

Downstream sequence

acaggcagtctcccgtgctgctgggagagtgtaaactggtacaaccttttggcactagcaaaacataaagagcacacaccttttgaTTTGATTTGAATCA

Target sequence

AAGAAAGCAGCAtaaaaattagtaaagcaaagatgaatacaatgagcaaaggatataaaagacagattacaaaaagagaaatacaaatggtcacacagaagaagatgctcacagtcactatgtgtttaatgcaaattaaaacatgaataacataccattttccattagtctggcaggaatcagaatgccagatgagacgaaatactgtcaggggagtgggctac