VISDB Viral Integration Site DataBase

VIS ID

TVIS30015610

Fusion event

HIV-C18orf25 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.1

Reference genome

Start

End

43813430/46233380 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-183-5p ; hsa-mir-221-5p ; hsa-mir-656-3p ; hsa-mir-3128 ; hsa-mir-4795-3p ; hsa-mir-8073 ; hsa-mir-142-3p ; hsa-mir-5589-3p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-3613-3p ; hsa-mir-5011-5p ; hsa-mir-570-3p ; hsa-mir-152-3p ; hsa-mir-222-3p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6514-3p ; hsa-mir-6894-3p ; hsa-mir-4799-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-126-5p ; hsa-mir-660-5p ; hsa-mir-1273d ; hsa-mir-500a-3p ; hsa-mir-767-5p ; hsa-mir-410-3p ; hsa-mir-141-3p ; hsa-mir-200a-3p ; hsa-mir-510-3p ; hsa-mir-4263 ; hsa-mir-5571-5p ; hsa-mir-708-3p ; hsa-mir-7844-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-3064-3p ; hsa-mir-155-3p ; hsa-mir-5581-3p ; hsa-mir-1283 ; hsa-mir-7853-5p ; hsa-mir-105-5p

Nearest miRNA

hsa-mir-1-2/Upstream/1263214; hsa-mir-122/Downstream/1147116;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/58242, chr18-CpG: 65/Downstream/100002

Upstream sequence

CTTTAGCAGGGTACATAGACATAGGGATGTGGCTAATATATCTAAATTTTGTGCTCTTTCTTGCTGTATGTAGTACAGATATTTTAGTTTTTTTATCTAT

Downstream sequence

TTTCTGTATTTATAGCTTCTCTTAAATATCCAGATGAATTACCTGAGTTATCTTCCAAATAACCCCACTTGAATCAGAGGCTTCATAACTTTATAGTTAG

Target sequence

GGATCTAAATCCTCAAAGCAGTAGGTCATGGATTTGTCCCTGAAATAGATAAATTGAAAGATGGTGACCTCTTCAGGTGCCTCA