Basic Information
VIS ID
TVIS30015619
Fusion event
HIV-C18orf63 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
72012138/74344903 (Hg38)
End
72012236/74344903 (Hg38)
Orient
+
Location type
Intronic
Target gene
C18orf63
Nearest miRNA
hsa-mir-1-2/Upstream/1491521;
Nearest TSS
ENST00000575820/Upstream/29090; ENST00000562582/Downstream/64512;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/28394, chr18-CpG: 138/Downstream/111468
Upstream sequence
aatttattcagaatattattgatgaatatttggattgtttctctttggaggctattactagtaatactgtgatgaacattcttgtatatgtctgctggtg
Downstream sequence
tgccccaaagcagtataggagaatttatgctgcttcacatccttgcccatttttggtattgttggtcttgaatttcagcccttctgataggtgtatttat
Target sequence
ctcatgtacatgaaacctccaggagtagaattggtatgggtatttccaactttgctggctacaccaaactatttccctaaccaatctgtattcccctc
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate