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TVIS30015627
Basic Information
VIS ID
TVIS30015627
Fusion event
HIV-MIDN integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1258617/1258618 (Hg38)
End
1258680/1258618 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA19B
Target gene
MIDN
miRNAs that regulate target gene
hsa-mir-425-5p
;
hsa-mir-130b-3p
;
hsa-mir-155-5p
;
hsa-mir-221-3p
;
hsa-mir-93-5p
;
hsa-mir-24-3p
;
hsa-let-7b-5p
;
hsa-mir-187-5p
;
hsa-mir-222-3p
;
hsa-mir-873-3p
;
hsa-mir-1279
;
hsa-mir-2110
;
hsa-mir-548v
;
hsa-mir-4271
;
hsa-mir-4487
;
hsa-mir-4667-5p
;
hsa-mir-4700-5p
;
hsa-mir-4725-3p
;
hsa-mir-4731-5p
;
hsa-mir-4747-5p
;
hsa-mir-5196-5p
;
hsa-mir-5580-3p
;
hsa-mir-6780b-5p
;
hsa-mir-6874-5p
;
hsa-mir-8089
;
hsa-mir-17-5p
;
hsa-mir-20a-5p
;
hsa-mir-106a-5p
;
hsa-mir-153-5p
;
hsa-mir-106b-5p
;
hsa-mir-20b-5p
;
hsa-mir-519c-3p
;
hsa-mir-526b-3p
;
hsa-mir-519b-3p
;
hsa-mir-519d-3p
;
hsa-mir-519a-3p
;
hsa-mir-1250-3p
;
hsa-mir-3607-3p
;
hsa-mir-3686
;
hsa-mir-3609
;
hsa-mir-548ah-5p
;
hsa-mir-1207-5p
;
hsa-mir-1321
;
hsa-mir-4270
;
hsa-mir-4441
;
hsa-mir-4739
;
hsa-mir-4756-5p
;
hsa-mir-4763-3p
;
hsa-mir-6754-5p
;
hsa-mir-7106-5p
;
hsa-mir-7150
;
hsa-mir-7154-3p
;
hsa-mir-452-3p
;
hsa-mir-631
;
hsa-mir-548t-3p
;
hsa-mir-3661
;
hsa-mir-548aa
;
hsa-mir-4447
;
hsa-mir-4472
;
hsa-mir-4749-3p
;
hsa-mir-548ap-3p
;
hsa-mir-548as-3p
;
hsa-mir-548at-3p
;
hsa-mir-6072
;
hsa-mir-6077
;
hsa-mir-548ay-3p
;
hsa-mir-6795-3p
;
hsa-mir-6826-3p
;
hsa-mir-6880-5p
;
hsa-mir-6887-3p
;
hsa-mir-6891-3p
;
hsa-mir-3065-3p
;
hsa-mir-4459
;
hsa-mir-4632-5p
;
hsa-mir-4722-5p
;
hsa-mir-4779
;
hsa-mir-4436b-3p
;
hsa-mir-6721-5p
;
hsa-mir-6735-5p
;
hsa-mir-6871-3p
;
hsa-mir-6879-5p
;
hsa-mir-7843-5p
;
hsa-mir-335-3p
;
hsa-mir-329-5p
;
hsa-mir-556-3p
;
hsa-mir-570-3p
;
hsa-mir-590-3p
;
hsa-mir-635
;
hsa-mir-1305
;
hsa-mir-3127-3p
;
hsa-mir-3141
;
hsa-mir-3160-5p
;
hsa-mir-4464
;
hsa-mir-4652-3p
;
hsa-mir-4743-3p
;
hsa-mir-4748
;
hsa-mir-2467-3p
;
hsa-mir-6756-3p
;
hsa-mir-6774-5p
;
hsa-mir-520a-5p
;
hsa-mir-525-5p
;
hsa-mir-203a-3p
;
hsa-mir-6801-5p
;
hsa-mir-6848-5p
;
hsa-mir-6846-5p
;
hsa-mir-4697-5p
;
hsa-mir-4488
;
hsa-mir-1237-5p
;
hsa-mir-6816-5p
;
hsa-mir-3196
;
hsa-mir-3180-3p
;
hsa-mir-3180
;
hsa-mir-25-5p
;
hsa-mir-658
;
hsa-mir-4692
;
hsa-mir-4514
;
hsa-mir-6715b-5p
;
hsa-mir-4269
;
hsa-mir-4742-5p
;
hsa-mir-510-5p
;
hsa-mir-4796-3p
;
hsa-mir-765
;
hsa-mir-766-5p
;
hsa-mir-3616-3p
;
hsa-mir-4524a-3p
;
hsa-mir-4428
;
hsa-mir-6500-5p
;
hsa-mir-4633-3p
;
hsa-mir-4736
;
hsa-mir-4768-5p
;
hsa-mir-6833-3p
;
hsa-mir-6873-3p
;
hsa-mir-2355-5p
;
hsa-mir-8059
;
hsa-mir-4471
;
hsa-mir-6845-3p
;
hsa-mir-500b-3p
;
hsa-mir-488-3p
;
hsa-mir-6722-5p
;
hsa-mir-7854-3p
;
hsa-mir-4751
;
hsa-mir-6730-5p
;
hsa-mir-5681a
;
hsa-mir-4257
;
hsa-mir-578
;
hsa-let-7a-5p
;
hsa-let-7c-5p
;
hsa-let-7d-5p
;
hsa-let-7e-5p
;
hsa-let-7f-5p
;
hsa-let-7g-5p
;
hsa-let-7i-5p
;
hsa-mir-106b-3p
;
hsa-mir-1252-5p
;
hsa-mir-1296-3p
;
hsa-mir-152-5p
;
hsa-mir-1827
;
hsa-mir-1909-3p
;
hsa-mir-191-3p
;
hsa-mir-23a-5p
;
hsa-mir-23b-5p
;
hsa-mir-3130-3p
;
hsa-mir-3173-3p
;
hsa-mir-3179
;
hsa-mir-328-5p
;
hsa-mir-3684
;
hsa-mir-4433a-3p
;
hsa-mir-4433b-3p
;
hsa-mir-4458
;
hsa-mir-4476
;
hsa-mir-4481
;
hsa-mir-4500
;
hsa-mir-4688
;
hsa-mir-4745-5p
;
hsa-mir-4761-3p
;
hsa-mir-4793-3p
;
hsa-mir-5195-5p
;
hsa-mir-602
;
hsa-mir-615-5p
;
hsa-mir-634
;
hsa-mir-637
;
hsa-mir-6502-3p
;
hsa-mir-6722-3p
;
hsa-mir-6732-5p
;
hsa-mir-6742-5p
;
hsa-mir-6743-5p
;
hsa-mir-6752-5p
;
hsa-mir-6756-5p
;
hsa-mir-6761-5p
;
hsa-mir-6766-5p
;
hsa-mir-6769a-5p
;
hsa-mir-6769b-5p
;
hsa-mir-6793-5p
;
hsa-mir-6795-5p
;
hsa-mir-6798-5p
;
hsa-mir-6804-5p
;
hsa-mir-6808-5p
;
hsa-mir-6828-5p
;
hsa-mir-6842-5p
;
hsa-mir-6864-5p
;
hsa-mir-6876-5p
;
hsa-mir-6885-5p
;
hsa-mir-6887-5p
;
hsa-mir-6891-5p
;
hsa-mir-6893-5p
;
hsa-mir-7109-5p
;
hsa-mir-7110-5p
;
hsa-mir-7515
;
hsa-mir-8065
;
hsa-mir-92a-2-5p
;
hsa-mir-940
;
hsa-mir-98-5p
;
hsa-mir-3184-5p
;
hsa-mir-381-5p
;
hsa-mir-423-5p
;
hsa-mir-4649-5p
;
hsa-mir-4737
;
hsa-mir-6729-5p
Nearest miRNA
hsa-mir-1302-11/Upstream/444965; hsa-let-7e/Downstream/557541;
Nearest TSS
ENST00000633603/Upstream/4934;
ENST00000592467/Downstream/766;
Nearest CpG islands
None/Target,
chr19-CpG: 112/Upstream/1269
,
chr19-CpG: 95/Downstream/1647
Upstream sequence
TTTTATTTTTTAATGATAATGGAGATGTCTGGACCCTTCCTCACCCCACCTGTCGGTCTTGTCCTGGCTCTGCCTGTCCCCCACCGTTGTTCTCGTAGGT
Downstream sequence
TCACGTGTTATAACTGTAGCGCTGTAAATTTTTTTGTGGGAGGGTGGGCAGGGAGGGGTCCCAGAGGGTAGAGCTCAAGGATTTTGGGTTTTGTTTTGTT
Target sequence
GAACCCCAGGTCCTCAACTCCCCCCCTTTATGTGTTGAAAGTTAATGGTTTCAGATGTGAACA
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Sample Information
×
Sample name
PT2
Sample type
PBMC
Age
25
Gender
Female
CpG Island Information
×
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