VISDB Viral Integration Site DataBase

VIS ID

TVIS30015635

Fusion event

HIV-ZNF555 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

2844709/2844522 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-let-7a-5p ; hsa-mir-4799-5p ; hsa-mir-4255 ; hsa-mir-1264 ; hsa-mir-3184-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-5692a ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4724-5p ; hsa-mir-125b-2-3p ; hsa-mir-1262 ; hsa-mir-1273g-3p ; hsa-mir-3120-5p ; hsa-mir-3664-5p ; hsa-mir-4252 ; hsa-mir-4457 ; hsa-mir-4522 ; hsa-mir-4701-3p ; hsa-mir-4705 ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-513b-5p ; hsa-mir-542-3p ; hsa-mir-6510-3p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6888-3p ; hsa-mir-766-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-1227/Upstream/213729; hsa-let-7e/Downstream/1116892;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/2307, chr19-CpG: 27/Downstream/14373

Upstream sequence

gatacagggttttgccatgttggccaggctggtctcgaactcctgacctcaggtggcccgcccgcctcagcctccccgagtgctggaattataggtgtga

Downstream sequence

gctagcttatgccagccaagggccaactttgcaggcaggactttctaaggttaggggccctcaggcctttgggttggctcttCCTGCgtccaccccctag

Target sequence

accaccatgcccCCAAccagggtgttttaaaattggcggctggtcacagaggtcccctgtgcctggctgtgccaagatttcagacacccaggaggaaagcagatctttagggtaaacacattgttgcataaacagtttcagcacaataagcaactcctctattgggatgagaaccctccccaaatccag