VISDB Viral Integration Site DataBase

VIS ID

TVIS30015652

Fusion event

HIV-HNRNPM integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

8527004/8462308 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-let-7f-1-3p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-191-5p ; hsa-mir-15b-5p ; hsa-mir-183-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-29a-3p

Nearest miRNA

hsa-mir-1227/Upstream/72928; hsa-let-7e/Downstream/1576046;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/16427, chr19-CpG: 60/Downstream/23347

Upstream sequence

TCACGCAGACTTCTTTCCTATAGATTTGGATTGCCTCTAGTCATGAATGAGTCTTCCAGACAGGGAAATTGATACGGAAATCTGTGGAATAGCTTGTTTG

Downstream sequence

TGGTGGGAGGAAAATCAAGGACATATTGTTAACGTGTTTTCACCTACTTTTACTGCACACCTGTAATGCCTAGTTCGGTGGTTTAGAGAATATGGAGTGT

Target sequence

GATGGCATCGCAATTTGTATGCATTTCACCTGCTTGCCACCAATGAGAGCGTATGTGTAAAACCTCCTCCCTTCCCCAGAAAAGTAAATCACGCAGACTTCTTTCCTATAGATTTGGATTGCCTCTAGTCATGAATGAGTCTTCCAGACAGGGAAATTGATACGGAAATCTGTGGAATAGCTTGTTTG