VISDB Viral Integration Site DataBase

VIS ID

TVIS30015679

Fusion event

HIV-S1PR2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

10333055/10222708 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-488-3p ; hsa-mir-4635 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-548c-3p ; hsa-mir-6818-3p ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-3606-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-6073 ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-6849-3p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-4493 ; hsa-mir-3185 ; hsa-mir-5693 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3714 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6721-5p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-1273g-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4519 ; hsa-mir-508-5p ; hsa-mir-24-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3913-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-450a-1-3p ; hsa-mir-4683 ; hsa-mir-4728-5p ; hsa-mir-4767 ; hsa-mir-4768-3p ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-6502-3p ; hsa-mir-6513-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6888-5p ; hsa-mir-7106-5p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-1227/Upstream/184295; hsa-let-7e/Downstream/7705;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/27520, chr19-CpG: 62/Downstream/1234

Upstream sequence

GACCTCAGCCGCCATCCCCTCCCCACCTCCAGCCGTGGTTTCCGGGCCTCAGAGAGACGGGGAGAAGTCGTCAAGTGGCAGCTGATGAAATTTGGGGAAG

Downstream sequence

CTGTGGATTTGGGCTCTGGATGGTCAGAGAGGAGGCCTCTAGCTCCTCAGGACAGTGGTTCTGTAGTCGCACGAAGTTGCCCAGAGAAGGTGGCAGGAGG

Target sequence

GTACCTTAGCTGGGGCTGCAGGTGTGGAGCTGAGAATAGCTTGGGGGGTGGCTGTTTTTGAAAGGAGGGTGTCTGTGCAAATATCACACCCAGAATTTTCTCAAGTTGCGCCTTGCATCAAGAGTCCCAAAGTCCTCCCCAGCCACCCAAACTCGTTTTTCTCACTTTTGGTGATTATTCTGTGCCCCAAATAGTGCAACTGAGCAATGAGGTCTGAGAATGAGGAATGGACCTCAGCCGCCATCCCCTCCCCAC