VISDB Viral Integration Site DataBase

VIS ID

TVIS30015706

Fusion event

HIV-MYO9B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

17308171/17197556 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-484 ; hsa-mir-93-5p ; hsa-let-7e-5p ; hsa-mir-154-5p ; hsa-mir-6794-3p ; hsa-mir-615-5p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-4639-3p ; hsa-mir-4714-5p ; hsa-mir-193a-5p

Nearest miRNA

hsa-mir-10395/Upstream/1747948; hsa-let-7e/Downstream/1084521;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/4467, chr19-CpG: 34/Downstream/8392

Upstream sequence

tagatagatGGGCAGGCAGGCAGGGTCTCTTGGGCTAAGGcaaggtttcctaccctccacactcaacatctggggctggctcactctctggggtggagac

Downstream sequence

cattctctgtagggtattgagtagcatccctgccctccactcaccagaggccagaagtacccacccactcctttccccccacccaagtggtgacaaccaa

Target sequence

CAATGAGTCAATGAGTAGAAGgatggatggatggatagatagatgatagatagatagatagatagatagatagatagatagatagatacatagatagatagatGGGCAGGCAGGCAGGGTCTCTTGGGCTAAGGcaaggtttcctaccctccacactcaacatctggggctggctcactctctggggtggagac