VISDB Viral Integration Site DataBase

VIS ID

TVIS30015715

Fusion event

HIV-SUGP1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

19401083/19289986 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-92a-3p ; hsa-mir-6728-5p ; hsa-mir-6878-3p ; hsa-mir-5187-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6744-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4707-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-212-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p

Nearest miRNA

hsa-mir-10395/Upstream/903352; hsa-let-7e/Downstream/145077;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/16512, chr19-CpG: 18/Downstream/15898

Upstream sequence

catacgtcgccctatgtgactcttcatctgAAAAAATCCCTCAAGTCAAGAATACAAGGAACTAAGAGGGAGTTAGGAAGAATATAAGGGCCATGTACTC

Downstream sequence

tggtacataaatctatacaaggagaactgagtgtgcttgtgttattatttttaatgtttagataatcaatgtacaaacattcttgctaagtcaggcacgg

Target sequence

GGCCCCCAACCCCTAATCTCGGTGGGTGTGGGTGATAGGAAATTTATGTCTGGAGATCTAAGAGCAACATGAACTTCTGCTCTGCTTCTCTTCTAGAATTTTAAGAAGGTGGTAGACTGGCAGATGTGACCCGCCATCACACAAGAAGAATGGAAGAGATGGTGGCACACTGAGACTAGTTGGAGACCCCTAGGAAATTACCCTTCAGTTTCCTGTGGCTCCCAAGTGATGGAGGAAGGCTGAAAGTTCTTGCGG