VISDB Viral Integration Site DataBase

VIS ID

TVIS30015718

Fusion event

HIV-GATAD2A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

19544866/19434115 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-10a-5p ; hsa-mir-103a-3p ; hsa-mir-98-5p ; hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-1322 ; hsa-mir-5187-5p ; hsa-mir-1276 ; hsa-mir-4640-5p ; hsa-mir-4726-5p ; hsa-mir-548c-3p ; hsa-mir-4311 ; hsa-mir-211-3p ; hsa-mir-4648 ; hsa-mir-92b-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4745-5p ; hsa-mir-4328 ; hsa-mir-4481 ; hsa-mir-4681 ; hsa-mir-583 ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-92a-2-5p ; hsa-mir-5010-5p ; hsa-mir-7111-5p ; hsa-mir-4525 ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6845-5p ; hsa-mir-6762-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4779 ; hsa-mir-4261 ; hsa-mir-3529-3p ; hsa-mir-1305 ; hsa-mir-1237-3p ; hsa-mir-1248 ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-18a-5p ; hsa-mir-18b-5p ; hsa-mir-1908-5p ; hsa-mir-195-5p ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3196 ; hsa-mir-3612 ; hsa-mir-3908 ; hsa-mir-3925-3p ; hsa-mir-424-5p ; hsa-mir-4305 ; hsa-mir-4443 ; hsa-mir-4466 ; hsa-mir-4706 ; hsa-mir-4735-3p ; hsa-mir-4749-5p ; hsa-mir-4777-5p ; hsa-mir-4787-5p ; hsa-mir-4802-5p ; hsa-mir-497-5p ; hsa-mir-518d-5p ; hsa-mir-518e-5p ; hsa-mir-518f-5p ; hsa-mir-519a-5p ; hsa-mir-519b-5p ; hsa-mir-519c-5p ; hsa-mir-520c-5p ; hsa-mir-522-5p ; hsa-mir-523-5p ; hsa-mir-526a ; hsa-mir-589-3p ; hsa-mir-6502-3p ; hsa-mir-650 ; hsa-mir-663a ; hsa-mir-6730-5p ; hsa-mir-6753-5p ; hsa-mir-675-5p ; hsa-mir-6787-5p ; hsa-mir-6816-5p ; hsa-mir-6827-5p ; hsa-mir-6838-5p ; hsa-mir-6868-3p ; hsa-mir-744-5p ; hsa-mir-766-3p

Nearest miRNA

hsa-mir-10395/Upstream/1047481; hsa-let-7e/Downstream/948;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/27541, chr19-CpG: 26/Downstream/67014

Upstream sequence

gcctgccatggcctcccaaagtgctgtaattagaggcatgagccactgtgcccggccTTCTTTCATTTTtcttgttgtttcattgtagtttctttatcct

Downstream sequence

taagtatttcaccttttttgtgctaatgtagatgacttttttcaggttttgagttctgattggtttgtgcctgtgtgtagaaacacagctgattttttat

Target sequence

ccactgtgcccggccTTCTTTCATTTTtcttgttgtttcattgtagtttctttatcct