VISDB Viral Integration Site DataBase

VIS ID

TVIS30015721

Fusion event

HIV-ZNF708 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p12

Reference genome

Start

End

21480550/21297925 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-222-3p ; hsa-mir-4504 ; hsa-mir-549a ; hsa-mir-3927-5p ; hsa-mir-5089-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-15b-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4698 ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-6869-5p ; hsa-mir-4502 ; hsa-mir-3921 ; hsa-mir-4653-5p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-6817-3p ; hsa-mir-576-3p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-5580-5p ; hsa-mir-3190-5p ; hsa-mir-483-5p ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-1224-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4493 ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-1273f ; hsa-mir-6818-3p ; hsa-mir-2110 ; hsa-mir-4684-5p ; hsa-mir-491-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-548c-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3656 ; hsa-mir-6087 ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-1289 ; hsa-mir-129-5p ; hsa-mir-1304-3p ; hsa-mir-143-3p ; hsa-mir-1910-3p ; hsa-mir-2682-5p ; hsa-mir-3198 ; hsa-mir-34b-5p ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4423-5p ; hsa-mir-449c-5p ; hsa-mir-4534 ; hsa-mir-4639-3p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-6501-5p ; hsa-mir-6511a-5p ; hsa-mir-6514-5p ; hsa-mir-6794-3p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-744-3p ; hsa-mir-802 ; hsa-mir-8055 ; hsa-mir-8082 ; hsa-mir-940

Nearest miRNA

hsa-mir-10395/Upstream/898571; hsa-let-7e/Downstream/13824775;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/215298, chr19-CpG: 18/Downstream/165601

Upstream sequence

aaaataatattacacaagctacatcttaagtcaaaaagtgtcatatttaacaacatgtactttaagtgaaaactctgaaaagagaaaaaaggacactgaa

Downstream sequence

caatagtagtttcatttactgggaacaaatgactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtacagacgcacatctcacatgagggttt

Target sequence

ataaaaaaagactgaaagtagcaagatgaaagtagaaattttatgtaaatattaaccaaatgagagaagaagaggtcaaaataatattacacaagctacatcttaagtcaaaaagtgtcatatttaacaacatgtactttaagtgaaaactctgaaaagagaaaaaaggacactgaa