VISDB Viral Integration Site DataBase

VIS ID

TVIS30015722

Fusion event

HIV-ZNF43 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p12

Reference genome

Start

End

22026056/21843524 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6510-3p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-661 ; hsa-mir-4486 ; hsa-mir-4696 ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-451b ; hsa-mir-508-5p ; hsa-mir-4432 ; hsa-mir-7703 ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1292-3p ; hsa-mir-1273g-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-665 ; hsa-mir-6825-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4655-5p ; hsa-mir-34b-3p

Nearest miRNA

hsa-mir-10395/Upstream/1444170; hsa-let-7e/Downstream/13279176;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/7499, chr19-CpG: 42/Downstream/8068

Nearby gene

ZNF43(No orient, 7356)

Upstream sequence

tcaccatctcaatgtagatgaatccatgcataacaacctcaatctcttctgcggactgtgtctcttagtaaaatcatagccttggccaggcgtggtgcct

Downstream sequence

cacacctgtaaccccagcactttgggaggccaaggcaggtggatcacctgaggtcaggagtagagaccagcctggccaacatggcaaaatctcatctcta

Target sequence

tctgtgtactgggcccaggcaggagagtcaaatcgctcacattctgagcagaggtatgtgtcacaatcacacctgcagaaagacccagAAATCAGATAAAACAGTTCTTCACGTGTCTTCATtctaggtatgagtcaataccatttggatattgggtctaagtacacaagtcaccatctcaatgtagatgaatccatgcataacaacctcaatctcttctgcggactgtgtctcttagtaaaatcatagccttgg