Basic Information
VIS ID
TVIS30015725
Fusion event
HIV-chr19 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
30519876/30028969 (Hg38)
End
30519756/30028969 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/9629615; hsa-let-7e/Downstream/5093731;
Nearest TSS
ENST00000633603/Upstream/16546; ENST00000590564/Downstream/947;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/86011, chr19-CpG: 51/Downstream/193532
Nearby gene
TAF9P3(+8256) ;
Upstream sequence
ttaattttttatgtggattcaagttaccatctggtggtgtttcctttcagcctgaagtacttgctttagcatatcttgtaaaaaaaattttggtggcaac
Downstream sequence
aaattctctttgtctatctgggaagatctttatttttgtcctcttttttgaaggatagttttactggatttagaattcttgtttgacagtagagtatgtt
Target sequence
taattacttttactggtactttaattttttatgtggattcaagttaccatctggtggtgtttcctttcagcctgaagtacttgctttagcatatcttgtaaaaaaaattttggtggcaac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate