VISDB Viral Integration Site DataBase

VIS ID

TVIS30015726

Fusion event

HIV-LSM14A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.11

Reference genome

Start

End

34676220/34185165 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-320c ; hsa-mir-615-3p ; hsa-mir-15b-5p ; hsa-mir-182-5p ; hsa-mir-196a-5p ; hsa-mir-26a-5p ; hsa-mir-17-5p ; hsa-mir-3941 ; hsa-mir-144-3p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-454-5p ; hsa-mir-1205 ; hsa-mir-371b-5p ; hsa-mir-4474-3p ; hsa-mir-5190 ; hsa-mir-921 ; hsa-mir-3606-5p ; hsa-mir-16-1-3p ; hsa-mir-376c-3p ; hsa-mir-493-5p ; hsa-mir-892a ; hsa-mir-888-3p ; hsa-mir-3136-5p ; hsa-mir-3177-5p ; hsa-mir-4318 ; hsa-mir-4439 ; hsa-mir-4513 ; hsa-mir-4693-5p ; hsa-mir-4699-3p ; hsa-mir-6855-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548z ; hsa-mir-548ac ; hsa-mir-548bb-3p ; hsa-mir-943 ; hsa-mir-4684-5p ; hsa-mir-6867-5p ; hsa-mir-6857-3p ; hsa-mir-5571-5p ; hsa-mir-4284 ; hsa-mir-24-3p ; hsa-mir-3182 ; hsa-mir-134-3p ; hsa-mir-7114-5p ; hsa-mir-17-3p ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-1237-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-4686 ; hsa-mir-8485 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-4276 ; hsa-mir-8062 ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p

Nearest miRNA

hsa-mir-10395/Upstream/13785811; hsa-let-7e/Downstream/937535;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/12010, chr19-CpG: 97/Downstream/69148

Upstream sequence

AATTGCCTTTTTGGTTTTATAAGGACAAGATGGGCTCTTAACAAGATGGCTTTGGGGTTTTTTCAGTCGAAGATGATGTAACCTCTAGAGTTAAGTGCGA

Downstream sequence

AGGAGTAATGCCTCTGTTAGGGGTGTTAAGTTCGTAGTGGGTTCAGGAAGAGATGGTGGAGGCTGAGGGACAGATGTTTTCATTCAGTGCAGTAATATTT

Target sequence

AGAAGTTGATTTTGAGAATATATTGCAGAAGGTGCAAGGAACGTCATCTGGGTTATGACCTCTGGAAGTGGAGGTAGTTTTTTGTCATTGGGTCGCCAGTGCTTGGCATGTGATCTGTGAGGTGATCGAGAATATTGCAGACACAAGGGC