VISDB Viral Integration Site DataBase

VIS ID

TVIS30015737

Fusion event

HIV-ZFP82 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

36896442/36405265 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-6081 ; hsa-mir-1468-3p ; hsa-mir-6514-5p ; hsa-mir-4802-5p ; hsa-mir-548p ; hsa-mir-3121-3p ; hsa-mir-129-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-489-3p ; hsa-mir-498 ; hsa-mir-6778-3p ; hsa-mir-2276-3p ; hsa-mir-1304-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6890-3p ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p

Nearest miRNA

hsa-mir-10395/Upstream/1059638; hsa-let-7e/Downstream/3004358;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/25888, chr19-CpG: 66/Downstream/13114

Nearest cancer related gene

ZFP82(TSG, No orient, 0)

Upstream sequence

aagagcgaaactgcatctcagaaaaaaaaaaaaaaaaaaaaaTGCAAAGGAGGAAAGCAACTGAATCAAAATATACAATGGTTGTCAACAGTGAGCCAAA

Downstream sequence

CCTGTGTTGATGGCTTCTTCCTGCCCAACTAGCCCTCACCTGGATATTGTCTTCTTCCTTTCCTCACAACTTTCCAAGGCTCTTTTCCTTGCTCCAATGA

Target sequence

GAGAGCACCACCTTACCCCTCAGCTCCATTAAGGAGGAGGAAAACTAGAGAGAACAATAATAAAAAAGAAGAGTGGTAAATGGGACAAATAAGTGCTTCTTTTAGTATCCCCCAGCTAAGACCTTAATTTGCTCCCCATGTCACAGACCTTTCCTCCTTGGGCCACAGACCTTTCCTCCTTGGGCCACAGACCTTTCCTCCTTGGGCCACAGACCTTTCAAGAGGGCTTTCTAAACAACATAAGGATGTGTCTCT