VISDB Viral Integration Site DataBase

VIS ID

TVIS30015739

Fusion event

HIV-ZNF527 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

37871476/37380317 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1273e ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6894-5p ; hsa-mir-4722-5p ; hsa-mir-2467-3p ; hsa-mir-1827 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-607 ; hsa-mir-3671 ; hsa-mir-934 ; hsa-mir-3618 ; hsa-mir-610 ; hsa-mir-138-1-3p

Nearest miRNA

hsa-mir-10395/Upstream/2034690; hsa-let-7e/Downstream/2029306;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/8986, chr19-CpG: 41/Downstream/23124

Upstream sequence

ATTTGTTTGTCTGTATGTCTTTCTGTCTCTTGCTCTCATTTTTCTTCCCCTGTGAACAGGACTCTCCATTTCTAAGCCCAACATGATCTCCTTACTGGAG

Downstream sequence

TCTCAATCCTTCTCAGCTCTTCTTTTCCTTTTATGGTTAGAATTGTATTACATTTCTAGATTTCTTTTTCAGAGTTTTTATTTTTATCAGAATTATCAAA

Target sequence

CAAGGGAAGGAACCGTGGATGGTGGAGAGAAAGATGTCACAGGGTCACTGTGCAGGTGAGTGACAGATCACCAGGCAGGGAGGACTATTGTAAGGTACTCAACCAAGTAGTAAGTAGGAAACTGTTTTGAGCTTCAGGTGGGATGAGAACTGAAATCTCCATAGTATGTGCTTCCCTAGAAACCTCACCACACCCTGGGGTTTTTTCTTTTTCTTTCCATCAAATTATACTCTCCGGTCTTCCACCTATACCTTG