VISDB Viral Integration Site DataBase

VIS ID

TVIS30015742

Fusion event

HIV-ZNF607 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

38194709/37703693 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-331-3p ; hsa-mir-320a ; hsa-mir-4737 ; hsa-mir-6131 ; hsa-mir-133a-5p ; hsa-mir-381-5p ; hsa-mir-4299 ; hsa-mir-4699-5p ; hsa-mir-320e ; hsa-mir-138-5p ; hsa-mir-1295a ; hsa-mir-5704 ; hsa-mir-6851-3p ; hsa-mir-938 ; hsa-mir-4691-3p ; hsa-mir-4747-3p ; hsa-mir-548at-5p ; hsa-mir-210-3p ; hsa-mir-147b ; hsa-mir-3912-5p ; hsa-mir-6854-3p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-5707 ; hsa-mir-6500-3p ; hsa-mir-1273e ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-6788-5p ; hsa-mir-1273h-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7160-5p ; hsa-mir-7112-3p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-665 ; hsa-mir-3614-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-106a-3p ; hsa-mir-25-3p ; hsa-mir-2681-3p ; hsa-mir-3192-5p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4252 ; hsa-mir-4537 ; hsa-mir-4684-3p ; hsa-mir-4701-5p ; hsa-mir-490-3p ; hsa-mir-5186 ; hsa-mir-5694 ; hsa-mir-588 ; hsa-mir-6499-3p ; hsa-mir-658 ; hsa-mir-7851-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-3065-5p ; hsa-mir-3529-3p ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-656-3p

Nearest miRNA

hsa-mir-10395/Upstream/2358066; hsa-let-7e/Downstream/1705930;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/11267, chr19-CpG: 50/Downstream/15513

Upstream sequence

ttaaaagtaaaaagatggaatcaatataacaaaccaaaaaaatggtgggctatattaatatcagacaacatagatttcaggacaaagaaaaacaggagga

Downstream sequence

ttgaaatgcaatgaaaaatacgtaagttaaaacataactggaaattggccaggcgtggtggctcacacctgtaatcccaacactttgggaggccgaggtg

Target sequence

ctcaagaaggtgcatgtcgtaacataaaagggatcagtctatcaagaaaacataaaaatcccaaacacttatgcacctgataacagactctcaaagtacataaaacaacaactga