VISDB Viral Integration Site DataBase

VIS ID

TVIS30015743

Fusion event

HIV-ZNF573 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

38243768/37752983 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-509-3p ; hsa-mir-545-5p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-224-5p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-5692a ; hsa-mir-6516-5p ; hsa-mir-1273e ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-1247-3p ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-302f ; hsa-mir-1304-5p ; hsa-mir-6765-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-193b-5p ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-7152-5p ; hsa-mir-4775 ; hsa-mir-1266-3p ; hsa-mir-32-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-676-5p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-4781-3p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-3622b-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-5693 ; hsa-mir-4716-5p ; hsa-mir-8077 ; hsa-mir-7160-5p ; hsa-mir-4663 ; hsa-mir-5186 ; hsa-mir-93-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-548av-3p ; hsa-mir-4279 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-1976 ; hsa-mir-325 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-431-5p ; hsa-mir-4294 ; hsa-mir-1289 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-924 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-8063 ; hsa-mir-6514-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-937-5p ; hsa-mir-5702 ; hsa-mir-3192-5p ; hsa-mir-5001-3p ; hsa-mir-6836-3p ; hsa-mir-3194-3p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-26a-2-3p ; hsa-mir-26a-1-3p ; hsa-mir-4532 ; hsa-mir-1273g-3p ; hsa-mir-145-3p ; hsa-mir-6512-5p

Nearest miRNA

hsa-mir-10395/Upstream/2407356; hsa-let-7e/Downstream/1656640;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/33192, chr19-CpG: 26/Downstream/26656

Upstream sequence

ctcagcattccaaaatgctgggattacaagtatgagccaTGGCATTTGAACTGTATAATTTTTGTAAACTTTTGTCTAACATTATTTCAggctgggtgtg

Downstream sequence

GGGGTGTGGCACACATCTGTAGTATATATTTTAGTTATATATTAGTGTACATCTATTCATGCAAAATTGTTATATTTCACAGTAAAATTTTATTATTAtt

Target sequence

gtaactcatgtctgtaatcctaacactttgggacactgaggtgggaggattgcttgagcccaggagttcaagatcagcttgtgccaaaaagcaagaccccgtctctacaaaaaaATTTTTAAAAAATCAGCCGGGGTTGGGGCAG