VISDB Viral Integration Site DataBase

VIS ID

TVIS30015767

Fusion event

HIV-ZC3H4 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.32

Reference genome

Start

End

47603442/47100449 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-423-3p ; hsa-mir-331-3p ; hsa-mir-183-5p ; hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-320a ; hsa-mir-218-5p ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-6077 ; hsa-mir-4455 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-6514-5p ; hsa-mir-4802-5p ; hsa-mir-8076 ; hsa-mir-3163 ; hsa-mir-7-5p ; hsa-mir-663b ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-6778-3p ; hsa-mir-1827 ; hsa-mir-361-3p ; hsa-mir-4650-5p ; hsa-mir-3065-3p ; hsa-mir-6513-3p ; hsa-mir-3677-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6510-5p ; hsa-mir-4690-5p ; hsa-mir-6165 ; hsa-mir-6871-3p ; hsa-mir-1224-5p ; hsa-mir-3650 ; hsa-mir-3915 ; hsa-mir-4436a ; hsa-mir-4689 ; hsa-mir-4725-5p ; hsa-mir-4751 ; hsa-mir-5000-3p ; hsa-mir-5004-5p ; hsa-mir-504-5p ; hsa-mir-6858-5p ; hsa-mir-7978

Nearest miRNA

hsa-mir-10395/Upstream/391095; hsa-let-7e/Downstream/126493;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/51570, chr19-CpG: 20/Downstream/10702

Upstream sequence

GAACAAATGTGCTCTGTCTCCTTTTCTTCAGCATTCTCAGGTGTCATCATAGCCTGCTCTGTGACATCATGCCATTTCCATGGTAACGTGCCTACGCCAC

Downstream sequence

GGCAACCACCCAAGTGAGACACAAAACTGGCAAAGAGAAGTCCAGGCATCAGCATCTGTACCCTGTACCCTACACCCTCACTTCAACATAAGACAGTCTA

Target sequence

AAGAAAGGCCCGAGACCTTCCCTTGAGTTAGGACGTAATGAAGCAGCCATAGGGGAAACCTCACGGAGGGATTTTCAGAGCCAGGAAATTCTTGAAATAAACCTCTGGGTCTTGCACATGCTTTTCAGTGTCCTTACTACCTAGGTTCATCAACCAGAAACCAAGAACAAATGTGCTCTGTCTCCTTTTCTTCAGCATTCTCAGGTGTCATCATAGCCTGCTCTGTGACATCATGCCATTTCCATGGTAACGTGC