VISDB Viral Integration Site DataBase

VIS ID

TVIS30015775

Fusion event

HIV-NUCB1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.33

Reference genome

Start

End

49423729/48920523 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-484 ; hsa-mir-92a-3p ; hsa-mir-4762-3p ; hsa-mir-1303 ; hsa-mir-744-3p ; hsa-mir-4303 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-6761-5p ; hsa-mir-4329 ; hsa-mir-4251 ; hsa-mir-4781-3p ; hsa-mir-483-5p ; hsa-mir-6131 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3663-5p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-3152-5p ; hsa-mir-3942-3p ; hsa-mir-6881-3p ; hsa-mir-6836-3p ; hsa-mir-1248 ; hsa-mir-877-3p ; hsa-mir-3614-3p ; hsa-mir-1245b-3p ; hsa-mir-1293 ; hsa-mir-3199 ; hsa-mir-363-5p ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-4483 ; hsa-mir-4515 ; hsa-mir-4648 ; hsa-mir-5008-5p ; hsa-mir-6089 ; hsa-mir-6730-5p ; hsa-mir-6733-3p ; hsa-mir-6745 ; hsa-mir-6748-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-8052 ; hsa-mir-1273e ; hsa-mir-1537-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-3664-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4499 ; hsa-mir-4523 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-545-5p ; hsa-mir-5690 ; hsa-mir-6086 ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6857-3p ; hsa-mir-6893-5p ; hsa-mir-873-3p ; hsa-mir-940 ; hsa-mir-143-3p ; hsa-mir-31-3p ; hsa-mir-4735-5p ; hsa-mir-4770 ; hsa-mir-4775 ; hsa-mir-590-3p ; hsa-mir-6088

Nearest miRNA

hsa-mir-10395/Upstream/1693502; hsa-let-7e/Downstream/89383;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/20162, chr19-CpG: 37/Downstream/12915

Upstream sequence

tcaggtgatcctccttccttagcctcctgagtaactgggactacaggcacataccaccatgcccagctaatctaggtctctgttttatttatttatttat

Downstream sequence

ttgtttgtttatttTTCAATacagagttttgctcttgttgcccaggctgtagtgcaatggtgcattctcagctcattgcaacctccacctcccaggttca

Target sequence

cataccaccatgcccagctaatctaggtctctgttttatttatttatttat