VISDB Viral Integration Site DataBase

VIS ID

TVIS30015779

Fusion event

HIV-PRR12 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.33

Reference genome

Start

End

50103609/49600081 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-744-5p ; hsa-mir-615-3p ; hsa-mir-320a ; hsa-mir-34a-5p ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6515-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6848-5p ; hsa-mir-7847-3p ; hsa-mir-6846-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-6797-5p ; hsa-mir-149-3p ; hsa-mir-1249-5p ; hsa-mir-766-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-194-3p ; hsa-mir-6805-5p ; hsa-mir-4786-5p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-6076 ; hsa-mir-6797-3p ; hsa-mir-6807-5p

Nearest miRNA

hsa-mir-10395/Upstream/99213; hsa-let-7e/Downstream/82036;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/2157, chr19-CpG: 32/Downstream/1478

Upstream sequence

TTATGATCACTAGGTAacagttgtgcaggttacgcactgtttaagagacaccattcacatacatggtgtaagcttgcgtgtttatgaagggactttcctg

Downstream sequence

CTAGGGGCATAGGAAGGGTTTAGGTTGTGCTCTGGTTTTGGACACAGTTTAAGGAGTGTAATGTCAGAAACAGAGGCATTGGGAAATGAGAGGTGGGAGC

Target sequence

attacacaagcattttgaggaaggtctatctttttctaattcactcagaggtgctaagtggactaggaggggcccCAAGGCAGACACTGGAGAATGCAGGGAGACAGGGCAGGTGATAAGTTACAGGGACAGGACAGGGGCTACTCAGGTTCTGAATGGTGGGAGGTGTGGGAACTGAGGAGGGCTCTGAGTCAACTGTGTGTGAAGGTACAGAAAGATGTCTGGGGGCAGAGAAAGACTTGGGGATGGGGGTGG