Basic Information
VIS ID
TVIS30015787
Fusion event
HIV-chr19 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
52835160/52331907 (Hg38)
End
52835181/52331907 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/50014; hsa-mir-10394/Downstream/1334772;
Nearest TSS
ENST00000633603/Upstream/31513; ENST00000599508/Downstream/4338;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/34289, chr19-CpG: 46/Downstream/4318
Nearby gene
ZNF610(No orient, 4337)
Upstream sequence
gctcagagcccttgtccactagaggcaaatatactctcttgtcttttatttccacatttgccccctttgttcaatccccctaggtccatgtgggttacaa
Downstream sequence
aattgggtgctTTATAAGTGGCATCACGAAGTGGCACCCTGAACAGCGACagtggcatccaaactcgggactatgaggacataaacgaagaaggtctgct
Target sequence
gtggcgcctgaacagggacag
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate