VISDB Viral Integration Site DataBase

VIS ID

TVIS30015797

Fusion event

HIV-ZNF274 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

58708346/58197194 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3180-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-1324 ; hsa-mir-4524b-3p ; hsa-mir-197-3p ; hsa-mir-4711-5p ; hsa-mir-7112-3p ; hsa-mir-6765-3p ; hsa-mir-1228-3p ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-4716-5p ; hsa-mir-4764-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-483-3p

Nearest miRNA

hsa-let-7e/Upstream/2808952; hsa-mir-10394/Downstream/137494;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/13454, chr19-CpG: 65/Downstream/6659

Upstream sequence

CCCTTATTCAGCATCACAGAAGTTGTACTAGAGATTACCTGAGAACATAGGGCTGGGAAGCCTTCGGGTGTCCCAGAACTCACTGGCAAGGATCCCTCTC

Downstream sequence

TGAACACAGCATTTTGGGAACCCCTTCAGTAGGAGTCCTCATTGTTTTCAGCATCAGAGGACTCATATGGGCAAACATCCTGTGAATGAAATCTGTGCAG

Target sequence

TCAGTCTTATCTTGAGAGGATTCATACTGGAAAAGTTCTTACATTGAGTATTACATCTAAGAGCTTCTGAAACCATGAGAATATAATTGCTGTGGGAAAGGTTTTATGCATAGCTCCCTTATTCAGCATCACAGAAGTTGTACTAGAGATTACCTGAGAACATAGGGCTGGGAAGCCTTCGGGTGTCCCAGAACTCACTGGCAAGGATCCCTCTC