Basic Information
VIS ID
TVIS30015808
Fusion event
HIV-BABAM2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p23.2
Reference genome
GRCh37/hg19
Start
28520051/28297184 (Hg38)
End
28519961/28297184 (Hg38)
Orient
-
Location type
Intronic
Target gene
BABAM2
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1301/Upstream/300735; hsa-mir-10b/Downstream/4234969;
Nearest TSS
ENST00000437798/Upstream/402564; ENST00000460736/Downstream/13275;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/406287, chr2-CpG: 302/Downstream/92913
Upstream sequence
TGTGACATAGTGAATGAGTCGTAAGCAGGTTATGCCAGTGTCCTCTGGAGTAGGAGAaggcaatgtggggcatagtaggagccgaatgtttgaatcatgg
Downstream sequence
gactagatttgagtcttgcccctgcctgactatgacatgagcaagttaatatacctcttagagtctctggtttgctcacctgttaaatgcaaatgttgaa
Target sequence
TGAATGAGTCGTAAGCAGGTTATGCCAGTGTCCTCTGGAGTAGGAGAaggcaatgtggggcatagtaggagccgaatgtttgaatcatgg
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate