VISDB Viral Integration Site DataBase

VIS ID

TVIS30015814

Fusion event

HIV-EIF2AK2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p22.2

Reference genome

Start

End

37374737/37148094 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-124-3p ; hsa-mir-877-5p ; hsa-mir-15b-5p ; hsa-mir-4769-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-6867-5p ; hsa-mir-574-5p ; hsa-mir-202-5p ; hsa-mir-7158-5p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-5196-3p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-298 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-510-5p ; hsa-mir-34b-3p ; hsa-mir-495-5p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-4762-5p ; hsa-mir-5586-5p ; hsa-mir-3606-3p ; hsa-mir-4282 ; hsa-mir-4698 ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-8063

Nearest miRNA

hsa-mir-1301/Upstream/1676608; hsa-mir-10b/Downstream/10229581;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/63344, chr2-CpG: 31/Downstream/8664

Upstream sequence

ACTGCACAATAAAGTTAATTTCTCCAAAATTTTCTACTTTAAAAACTCAACTTggccaggtgtggtggctcacgcctataatcccagccaaggtgggcgg

Downstream sequence

atcacctgagctcaggagttcgagaccagcctgggcaacatggcgaaaccccatctcAATTTTGAAATTGTTTTAAAAAATAAAGGAAAGAAAAAAAACT

Target sequence

agaataatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcCATATCATTTTTTATAGCAACCTACCTCCTATCATGTGGAGGTCCTGAATTAGGCAGTTCTTGATATTTAAGTACTACTCCCTGCTTCTGACGGTATGTATTAAGTTCCTCCATGAAGAAACCTGCTGAAAGATCACCAGCCATTTCTTCTTCCCGTATCCTACAATGGAAGAGACATTTGAATGAG