Basic Information
VIS ID
TVIS30015815
Fusion event
HIV-chr2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
38884729/38657587 (Hg38)
End
38884818/38657587 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/3186101; hsa-mir-10b/Downstream/8720088;
Nearest TSS
ENST00000437798/Upstream/54001; ENST00000427858/Downstream/8323;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/53925, chr2-CpG: 116/Downstream/92806
Nearby gene
GALM(No orient, 8322)
Upstream sequence
ttgcttatctgctcttcaactgaagaacctgaagttgtttccacatttttattcttatacataatatggctataaatattcttacacgcatacgcaagag
Downstream sequence
acaatttgtcctccagagtggttttaccaactaagacatccaccagctgtgtataagagatgcttcacattctctccagcattCAAtcattcattcaaca
Target sequence
atcatccagagtatattatagggaatgaaaatgctgggtattcatggggtgttgctggtttatgtgcaatttgactttattatatatca
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate