VISDB Viral Integration Site DataBase

VIS ID

TVIS30015826

Fusion event

HIV-PELI1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p14

Reference genome

Start

End

64340291/64112941 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-374b-5p ; hsa-mir-340-5p ; hsa-mir-21-5p ; hsa-mir-296-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-374a-5p ; hsa-mir-578 ; hsa-mir-6794-3p ; hsa-mir-668-3p ; hsa-mir-6845-3p ; hsa-mir-4639-3p ; hsa-mir-224-5p ; hsa-mir-548e-5p

Nearest miRNA

hsa-mir-1301/Upstream/1907024; hsa-mir-10b/Downstream/227806;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/93182, chr2-CpG: 112/Downstream/30813

Upstream sequence

ATGTGTTCTCTGAAGAAAGATTCATGATCTTCCCAAAGGTTTATACTCTTTAACAAAGACCAGTACCTAGACAATGCTTTCCTACTCACTGTCTTTATAT

Downstream sequence

caaatgtcatggcatgcacctatagccccagctactcagaaagctgaggtgggaggatcacttgtgcccaggagtttgaggctacagtgagctgtgatcc

Target sequence

ATTCTCTCTATATTTTAAAATCTGAGTAAAAGAATTCTTCAAAATGAATTCCTAggctgggcatggtggctcatgcccgtaatcccagcactttgggaggccaaggtgagaggatcacttgaggccaggagtttgagaccagcctgcgcaacatagtaagactcccgtctctacaaaagatttaaaaaaaaaaaagtaaaaacagaaaacattagc