VISDB Viral Integration Site DataBase

VIS ID

TVIS30015828

Fusion event

HIV-RAB1A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p14

Reference genome

Start

End

65328362/65101055 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-221-3p ; hsa-mir-3158-5p ; hsa-mir-3124-3p ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-3185 ; hsa-mir-4691-3p ; hsa-mir-4719 ; hsa-mir-449b-3p ; hsa-mir-544a ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-3065-5p ; hsa-mir-4778-5p ; hsa-mir-648 ; hsa-mir-376c-3p ; hsa-mir-338-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-19a-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-873-5p ; hsa-mir-3159 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-541-5p ; hsa-mir-7156-3p ; hsa-mir-34a-3p ; hsa-mir-4762-3p ; hsa-mir-3679-3p ; hsa-mir-4680-5p ; hsa-mir-4539 ; hsa-mir-130b-5p ; hsa-mir-15b-5p ; hsa-mir-101-5p

Nearest miRNA

hsa-mir-1301/Upstream/575490; hsa-mir-10b/Downstream/1257194;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/44020, chr2-CpG: 99/Downstream/28546

Upstream sequence

accaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggcacagtagtacacgcctgtaataccagctactcgggaggctgaggcatga

Downstream sequence

TCGTCTGCCCAAAAGCCTCAGTTATCTCTCTCTGCATAACCCTACTTACTCCCCAGCCCCAAGGTCATGTGGCATTTATTCATCCTTCAGTTTTGAGCTC

Target sequence

gaatcacttgaacccgggaggtgggagttatagtgagctgagatcatgccactgtactccagcctggatgacagagctagactccatctcaaaaaaaaaaagaaaaagaaagaaaTGCTGAATTCTTGTAAATCTCTAAATGACCTTTACTCCCATGCCTGAGCCGTTACTAT