VISDB Viral Integration Site DataBase

VIS ID

TVIS30015831

Fusion event

HIV-GFPT1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p13.3

Reference genome

Start

End

69601457/69374263 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2E

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-590-3p ; hsa-mir-335-5p ; hsa-mir-34a-5p ; hsa-mir-302c-5p ; hsa-mir-888-3p ; hsa-mir-4768-5p ; hsa-mir-6833-3p ; hsa-mir-1180-5p ; hsa-mir-7114-3p ; hsa-mir-485-5p ; hsa-mir-3529-3p ; hsa-mir-3065-5p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-302d-5p ; hsa-mir-2277-3p ; hsa-mir-302b-5p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-383-3p ; hsa-mir-1304-3p ; hsa-mir-3680-5p ; hsa-mir-34b-3p ; hsa-mir-2113 ; hsa-mir-4477b ; hsa-mir-218-5p ; hsa-mir-3912-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4461 ; hsa-mir-3163 ; hsa-mir-646 ; hsa-mir-541-5p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-4282 ; hsa-mir-330-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4463 ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-6873-3p ; hsa-mir-1229-3p ; hsa-mir-452-3p ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-1281 ; hsa-mir-3620-3p ; hsa-mir-6865-3p ; hsa-mir-141-5p ; hsa-mir-4762-3p ; hsa-mir-4303 ; hsa-mir-5689 ; hsa-mir-27b-5p ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-5586-3p ; hsa-mir-6782-3p ; hsa-mir-140-3p ; hsa-mir-122-5p ; hsa-mir-129-5p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-3652 ; hsa-mir-4280 ; hsa-mir-431-5p ; hsa-mir-4430 ; hsa-mir-4755-3p ; hsa-mir-5007-5p ; hsa-mir-504-3p ; hsa-mir-5691 ; hsa-mir-6805-3p ; hsa-mir-8055 ; hsa-mir-924

Nearest miRNA

hsa-mir-1301/Upstream/270508; hsa-mir-10b/Downstream/878655;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/66620, chr2-CpG: 47/Downstream/12813

Upstream sequence

TTAGCATAATTATGTCAAGTATGTGAAAAAACGTGAAGTTAGATTCTGTCTTTCAAACATTTCAAACCGTTTAAAGGCAATGGAACTTTTTCAAGGGGGA

Downstream sequence

ttttttgagacagagtctcactctgtcacgcaggatggagtccagcagcacgatctcggctcacggcaagctccgcctcccgggttcacaccattctcct

Target sequence

GTTTCTCATAAGTATAAAAAACTAAACATGTCAAAATACACATTTATAAttttttctttttt