Basic Information
VIS ID
TVIS30015843
Fusion event
HIV-chr2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p13.3
Reference genome
End
70326922/70099718 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-1301/Upstream/995963; hsa-mir-10b/Downstream/153200;
Nearby gene
PCBP1(No orient, 10516)
Upstream sequence
aaaattaaaaaattaaaaattaaaaaaatttagccaggtgccatggtgtgcgcctgtggtcccagctactcgggaggctgaggcaggagaattgcttgaa
Downstream sequence
ccatctcaaaacaacaaaataaaataaaatcctttgcccatttaaaaaattaagttgtctttttattattgcgttgtaagagttctatatatattctata
Target sequence
cccgggaagtggaggtttcagtgagccgagatcacgctatcacaattccagcctgggtgacagagcgagaat
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate