VISDB Viral Integration Site DataBase

VIS ID

TVIS30015861

Fusion event

HIV-SLC20A1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q14.1

Reference genome

Start

End

113408969/112651614 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2B

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-let-7a-5p ; hsa-mir-196a-5p ; hsa-let-7d-5p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-379-5p ; hsa-mir-3646 ; hsa-mir-3927-3p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-3529-5p ; hsa-mir-6831-5p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-935 ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-4802-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/880480; hsa-mir-10b/Downstream/931345;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/5112, chr2-CpG: 62/Downstream/112727

Upstream sequence

tgagtcagcctccagagtagctgggactacagatgcttgccaccacatccgggctaatttttttggtatttttagtagagacagggtttcaccgtattac

Downstream sequence

ccaggatggtctcgatctcctgacctcatgattgtcctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagccTCCTCCCAT

Target sequence

ATCTTTGCTCCCAAtttttttttttttctgagatggagtcttactctgttgcccaggctggagtgaggtggcccagtctccactgactgcaacctctgtctcccaggttcaagtgattctcctgagtcagcctccagagtagctgggactacagatgcttgccaccacatccgggctaatttttttggtatttttagtagagacagggtttcaccgtattac