VISDB Viral Integration Site DataBase

VIS ID

TVIS30015877

Fusion event

HIV-RBMS1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q24.2

Reference genome

Start

End

161334650/160478404 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-mir-1249-3p ; hsa-mir-4662a-5p ; hsa-mir-325 ; hsa-mir-3976 ; hsa-mir-6856-5p ; hsa-mir-6758-5p

Nearest miRNA

hsa-mir-128-1/Upstream/70522; hsa-mir-10b/Downstream/8104539;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/70372, chr2-CpG: 100/Downstream/14308

Upstream sequence

GAAGGACGCTTAAAACAGTGAGAAATAAACAAAAACAAACAAACAAAGCTAGCTACAATTGTACCTTGCTTTTACTCAATCATACAATCCTAAGAAGTTG

Downstream sequence

GGTGAAAATCAAATGTAATAAAACAAACTCATCCTTTTCAAAAGACTTAGGAAATTGCACAAACCATTTCTCCTAATATCTAATTAATCTTTAGTATGCC

Target sequence

CACTTGTCAAATAATAATGGTACACATACAACTTAGGTTTCCTTACAGATAGCACGATTTTAAATTGTCCACGGTCCTTTCCTTCTGTGTATCCCAACACTTCGAGAATTCACCAGTTATGGTCACACACACTTATGGGAAGAAAAGTTTTGAACCAACCACGGTGAAGGACGCTTAAAACAGTGAGAAATAAACAAAAACAAACAAACAAAGCTAGCTACAATTGTACCTTGCTTTTACTCAATCATACAATCC