VISDB Viral Integration Site DataBase

VIS ID

TVIS30015889

Fusion event

HIV-ANKRD44 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q33.1

Reference genome

Start

End

198084720/197219773 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-335-3p ; hsa-mir-1277-5p ; hsa-mir-4789-5p ; hsa-mir-190a-3p ; hsa-mir-3941 ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-3171 ; hsa-mir-380-3p ; hsa-mir-383-5p ; hsa-mir-5096 ; hsa-mir-6513-3p ; hsa-mir-129-5p ; hsa-mir-7158-3p ; hsa-mir-4502

Nearest miRNA

hsa-mir-10b/Upstream/8086662; hsa-mir-1244-1/Downstream/9563461;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/55059, chr2-CpG: 97/Downstream/90161

Upstream sequence

AATCATGGTCTGCAAAGTGCAGGAAAAATAATTCACCAGATGGATCATGTGGTGTAAATCACTGattttttttttaatttttatatttGTAATAGGAGAA

Downstream sequence

aataatttattaaaagtttaattGAAGAATAATCAAGATCAATTTTTTCATGTCAGCAGAAAACTCTATGCAAATTACTTTGAAAGTAATCTAAAAAACT

Target sequence

CGCACCAGGATGCAAAGGAAGCTCAAATCTCACCTCCCAAGGGAAAAAGACATTCTACAGAGAAAATTAGAATTGTGCCAAGAGGGCAAATCTCCAAAGGCAGGGAGAGGCCTTAGAGAATACGAAGGAAGTAACAAGAGTGAGTGAATGCCTTCTAACAAAAATTTCCCTTTATTTTAACAAGCTATAGAAGGCTGTTCTTCATATTAACCTTACatataaa