VISDB Viral Integration Site DataBase

VIS ID

TVIS30015900

Fusion event

HIV-ARPC2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

219101318/218236817 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-149-5p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-3194-5p ; hsa-mir-6878-3p ; hsa-mir-640 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-378a-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-3663-5p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-4735-5p ; hsa-mir-6832-5p ; hsa-mir-6872-3p ; hsa-mir-590-3p

Nearest miRNA

hsa-mir-10b/Upstream/336189; hsa-mir-1244-1/Downstream/43308;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/19243, chr2-CpG: 58/Downstream/33247

Upstream sequence

ggaggcggatgttgtggtgagccgagatcatgccattgcactccagcctgggcaataagagtaaaactccatctcaaaaaaaaaaaaaTACAGATCTCAG

Downstream sequence

GAATGCTTTTGGGAAAAAATGAAATAGTAATGAGGTTTCAGATACTTAGAAGTGTGAAAGCCATACAGTTCTGGTGAAGTTATTCCCGTCAGTTGCCTAG

Target sequence

cagcatgaccaacatggagaaaccccgtctctactaaaagtacaaaattagccaggcctggtggcgcatgcctgtaatcccagctgcctaggaggctgaggcaggagaatcgcttgaacctgggaggcggatgttgtggtgagccgagatcatgccattgcactccagcctgggcaataagagtaaaactccatctcaaaaaaaaaaaaaTACAGATCTCAG