VISDB Viral Integration Site DataBase

VIS ID

TVIS30015901

Fusion event

HIV-STK36 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

219552103/218687540 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-603

Nearest miRNA

hsa-mir-10b/Upstream/284818; hsa-mir-1244-1/Downstream/135550;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/15450, chr2-CpG: 70/Downstream/23185

Upstream sequence

ggatctaagttgatcgtttttgcatgtggatatataattgtcctggcaccatttgtggaaaagaactctcctttcctcattgaattggcttggcactttG

Downstream sequence

CACTTGTCTTTTGGCGCTAACACGTTTTCCTCCTAGTGTTGGATAACTTgcagtgtggggaggcagactgaaagctctgcctttagggataagactccct

Target sequence

gctcttacatgtaggtttctgatccatcttgagctaatttttgtatataatgtgaggaaaggatctaagttgatcgtttttgcatgtggatatataattgtcctggcaccatttgtggaaaagaactctcctttcctcattgaattggcttggcactttG