VISDB Viral Integration Site DataBase

VIS ID

TVIS30015902

Fusion event

HIV-RETREG2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

220044309/219179493 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-26a-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6736-5p ; hsa-mir-1262 ; hsa-mir-4701-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6134 ; hsa-mir-6089 ; hsa-mir-15b-3p ; hsa-mir-128-3p ; hsa-mir-1321 ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-211-3p ; hsa-mir-216a-3p ; hsa-mir-2467-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-28-5p ; hsa-mir-3612 ; hsa-mir-363-5p ; hsa-mir-3681-3p ; hsa-mir-4270 ; hsa-mir-4441 ; hsa-mir-4514 ; hsa-mir-4660 ; hsa-mir-4692 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6505-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6745 ; hsa-mir-6754-5p ; hsa-mir-6804-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-10b/Upstream/120743; hsa-mir-1244-1/Downstream/114618;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/1204, chr2-CpG: 65/Downstream/27090

Upstream sequence

gagttaatacacatgctatacttatgatagtgtttcacatataagccttataaatAGAACGTCAGTGTTGTTTTTCTTGTTATCCATATAATTTACTTAG

Downstream sequence

gcaaacaaaaacatgtaacagctcccccattggcatctgaagaaggtgctctggggctgcagaggagggacaactatttctgccttggggagtGTCTCCC

Target sequence

TAGGTGACAGGCTGtatgtgagttgcttgggagataagcatgagtaaaatctagttcttatgttggagaagggtaatgtctaaaggagacagac