VISDB Viral Integration Site DataBase

VIS ID

TVIS30015908

Fusion event

HIV-ING5 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

q37.3

Reference genome

Start

End

242651858/241712624 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-1914-5p ; hsa-mir-8485 ; hsa-mir-649 ; hsa-mir-6515-5p ; hsa-mir-4443 ; hsa-mir-6827-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-1225-3p ; hsa-mir-432-5p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-6769a-3p ; hsa-mir-331-3p ; hsa-mir-193a-5p

Nearest miRNA

hsa-mir-10b/Upstream/234642;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/9583, chr2-CpG: 23/Downstream/11508

Nearest cancer related gene

ING5(TSG, No orient, 0)

Upstream sequence

ATTTATTAAATAGACATGTCATTTAACTTGAAGTTTTTTGAGATACTTTATTTAAAGCATTCTCCCACTGACACCCTCCCTGCCAAAGGTGTTGTATACC

Downstream sequence

CTCCAAAGAGATCGTAGCATTACCTCAGAGGAGTGACATTTAGACTAAAGAGAAAATGCTGAAATGCCACGAAGCCTCTGTGGAGATGATCTCACAGAGG

Target sequence

AGCTAGATTTCTGTATATCTGTCAGTTATTTTATGTGTCAACATATAGTGTGCATATATTCATTGTTAATTATGTGGCCACATTTATTAAATAGACATGTCATTTAACTTGAAGTTTTTTGAGATACTTTATTTAAAGCATTCTCCCACTGACACCCTCCCTGCCAAAGGTGTTGTATACC