Basic Information
VIS ID
TVIS30015910
Fusion event
HIV-chr20 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p13
Reference genome
GRCh37/hg19
Start
4029967/4049320 (Hg38)
End
4029987/4049320 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/131749; hsa-mir-1-1/Downstream/3322288;
Nearest TSS
ENST00000382410/Upstream/33738; ENST00000493223/Downstream/25845;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/33562, chr20-CpG: 124/Downstream/99230
Nearby gene
RNF24(No orient, 33913)
Upstream sequence
tctctctctggttttttattcttgtgaataaagctatgaacattcatgtacacgtctttctgCAGTCAAGGATCAtttcttttttcttttttttttgaga
Downstream sequence
caggctagagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccccagtagctgggactac
Target sequence
cagagtttcgctctgtcgct
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate