VISDB Viral Integration Site DataBase

VIS ID

TVIS30015915

Fusion event

HIV-ASXL1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q11.21

Reference genome

Start

End

30990912/32403367 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-6077 ; hsa-mir-7150 ; hsa-mir-6835-5p ; hsa-mir-3190-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-6849-5p ; hsa-mir-4270 ; hsa-mir-3681-5p ; hsa-mir-6732-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4463 ; hsa-mir-7-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/165520; hsa-mir-1-1/Downstream/1645752;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/44137, chr20-CpG: 22/Downstream/52770

Nearby gene

ASXL1(No orient, 30818)

Nearest cancer related gene

ASXL1(TSG, No orient, 0)

Upstream sequence

ctgtcaataccgtactgtcttgattactgtaatgtagctgtatagtaagtcctaaaatcaggtagtgttattcctccaccttcgtttttctttttcagag

Downstream sequence

ttgtttcagctattctggtttctttgtctttacatggaaattttatttatttattatttattttcttgagacagcctcagtgttttgcccgggctggggt

Target sequence

tgggggaccaattattccaaaaccatttgcttaaaatgattattctttatttattgaattgctttctcacctctagcaaaagtcagttggccatattttgtgaaaagttctattcctacgcacactgttctggctcattgacctacgcatctgttcctctgtcaataccgtactgtcttgattactgtaatgtagctgtatagtaagtcctaaaatcaggtagtgttattcctccaccttcgtttttctttttca