VISDB Viral Integration Site DataBase

VIS ID

TVIS30015916

Fusion event

HIV-MAPRE1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q11.21

Reference genome

Start

End

31424708/32836719 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-10b-5p ; hsa-mir-122-5p ; hsa-mir-98-5p ; hsa-mir-877-5p ; hsa-mir-93-3p ; hsa-mir-196b-5p ; hsa-mir-92a-3p ; hsa-mir-5197-3p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-6809-5p ; hsa-mir-6081 ; hsa-mir-4468 ; hsa-mir-1253 ; hsa-mir-3919

Nearest miRNA

hsa-mir-103a-2/Upstream/598872; hsa-mir-1-1/Downstream/1212400;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/16401, chr20-CpG: 30/Downstream/564619

Nearest cancer related gene

MAPRE1(OG, No orient, 0)

Upstream sequence

GTTTTTCTCTGCAGATAATTCCTGTGGACAAATTAGTAAAAGGAAAGTTTCAGGACAATTTTGAATTCGTTCAGTGGTTCAAGAAGTTTTTCGATGCAAA

Downstream sequence

AACTAGAATTTTTTTCAGTAGCCATAGGCTTAGGGATCTTAAGAAATATAATCCCAGGCATgtggccagagtatggattttggcatcaggcagataacgg

Target sequence

CTATGATGGAAAAGACTATGACCCTGTGGCTGCCAGACAAGGTCAAGAAACTGCAGTGGCTCCTTCCCTTGTTGCTCCAGCTCTGAATAAACCGAAGAAACCTCTCACTTCTAGCAGTGCAGGTAAAAAAACAACCCCAAAACGTTTCCAAAAAATAGCGTTCCAGATATTCATTCAGCGTTC