Basic Information
VIS ID
TVIS30015917
Fusion event
HIV-chr20 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
32942299/34354493 (Hg38)
End
32942274/34354493 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/305303; hsa-mir-1-1/Downstream/111832;
Nearest TSS
ENST00000382410/Upstream/42691; ENST00000479215/Downstream/8742;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/50921, chr20-CpG: 98/Downstream/8685
Nearby gene
ITCH(No orient, 8762)
Upstream sequence
GGGGttttgtttgtttgtttttgagacaaagtcttgctctgttgcccaagctacagtgcagtggcgagaccttggctcactgaaacctccacttcccggg
Downstream sequence
ttcaagcagttctcctgcctcagcctcccgagtagctgggattataggcacctgccaccatgcctggctagttgtttggtatttttagtagagatggggt
Target sequence
ctcactgaaacctccacttcccggg
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
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