VISDB Viral Integration Site DataBase

VIS ID

TVIS30015919

Fusion event

HIV-RBM39 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr20

Cytoband

q11.22

Reference genome

Start

End

34295650/35707904 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-484 ; hsa-mir-221-3p ; hsa-mir-26a-5p ; hsa-mir-22-3p ; hsa-mir-369-5p ; hsa-mir-382-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/253807; hsa-mir-1-1/Downstream/2808659;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/8125, chr20-CpG: 81/Downstream/33664

Upstream sequence

CAGCATATATGTGTAATATCCACTACTACCAAAACATACTGGGGTTTGAAGTTTAAAGAGCATTTTCCAAGACAGTTGCTCCAATGCTTTCACGTGATTT

Downstream sequence

ACAAAAATATTACCAGTAGCTGTTACAGAACTCACCGTAATCATATTATCTGACCAAATTTCATTCCAAAACATAATAACAAACAAAGCTAAGGATAAAA

Target sequence

CTATTAAAAATAAATCCTATTAATAAATCAAATGTTTTAAAAATGTTTTCGCACAATAAAAGAACACTGAAAAGAGCAGCATATATGTGTAATATCCACTACTACCAAAACATACTGGGGTTTGAAGTTTAAAGAGCATTTTCCAAGACAGTTGCTCCAATGCTTTCACGTGATTT